Capra hircus,as an important economic livestock animals,it is necessary to find out their transcriptome information about reproductive performance.In this study,we performed de novo transcriptome sequencing to produce the first transcriptome dataset for goats ovary using high-throughput sequencing technologies.The result will be contributable to research goats reproductive performance.RNA-seq analysis generated more than 38.8 million clean pair end(PE)reads,which were assembled into 80,069 unigenes(mean size = 619 bp).