Dimensionality Reduction and Efficiency of in Vivo Protein FoldingA Molec-ular Dynamics Study

来源 :数学生物物理及分子生物学研讨会(The Mathematical Biophysics and Molecular Bi | 被引量 : 0次 | 上传用户:uuukns111
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
  In vivo proteins can efficiently fold into their native states to perform their functions.However,the physical mechanism of this efficient folding is still not well understood.A lot of solutions have been proposed to solve this problem.The key point of all these proposals is how to reduce the dimensionality of conformational space that a protein needs to search.Levinthal suggested a nucleation mechanism1.Similar point of view was also proposed by Dill et al2.From the point of view of computational complexity3,4,the paradox could be solved if only near-neighbor in-teractions of each amino acid were involved.Here we show that cell has developed a special way to solve the problem of protein folding efficiency.The confined-space folding in the ribosomal exit tunnel and co-releasing folding from the tunnel restrict-ed the conformational space searching by proteins and guaranteed the formation of stable local interactions.This greatly reduced the dimensions of the conformational space searched by proteins and makes them fold along a well-defined pathway.Our results indicate that the folding environment and manners are important for efficient protein folding.We should focus not only on proteins themselves but also their fold-ing manners and environments in order to solve the protein folding problem.
其他文献
  The self-assembly and co-assembly of polypeptides have attracted great attention due to their important roles in the design of novel bio-nanomaterials and i
会议
  聚合物纳米线是纳米光子器件的重要构筑单元之一。对于高密度的纳米光子集成来说,有源和无源聚合物纳米线都是必需的。与无源纳米线相比,既能用作光源又能用作光波导的有源
会议
  2μm人眼安全波段的激光在遥感、雷达、医疗及光纤通信等领域应用广泛。铥钬共掺的特种光纤由于其Tm3+离子具有较宽的吸收光谱,利用Tm3+→Ho3+之间的能量转移机制使其成为
  Due to the complex nature of biomolecules,computational studies of inter-action in proteins are primarily based on classical force fields.However,the inhere
会议
  Department of Chemistry and Physics,Duke University and Key Labora-tory of Theoretical Chemistry of Environment,School of Chemistry and Environment,South Ch
会议
  The understanding of biomolecular structure,flexibility,function,and dy-namics is one of the most challenging tasks in biological science.We have introduced
会议
  提出了一种双DBR半导体激光器结构,该结构包括布拉格光栅、脊形波导、Y形波导、锥形放大器等部分,目标是实现半导体激光器双波长高功率、高光束质量的近红外激射。本文使用
  本文提出了高吸收率宽波段超材料纳米环柱吸收器模型,该吸收器由双六边形超材料纳米柱与硅纳米环柱组成,其中硅纳米环柱中集成了金纳米圆柱;六边形纳米柱与纳米环柱共同作用
会议
  Biology is believed to be the last forefront of natural sciences.Recent advances in biotechnologies have led to the exponential growth of biological data,wh
会议
  光阻法液体颗粒计数器广泛应用于医疗、制药、机械、电力等领域,其测定的典型粒径范围是1μm~100μm.仪器通常需要颗粒完全处于检测光束中,通过颗粒整体的遮挡面积来确定其
会议