Film mulching reduces antibiotic resistance genes in the phyllosphere of lettuce

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Phyllosphere is an important reservoir of antibiotic resistance genes (ARGs),but the transfer mechanism of ARGs from soil and air to phyllosphere remains unclear.This study demon-strated that soil-air-phyllosphere was the dominant ARG transfer pathway,and blocking it by film mulching can reduce typical phyllosphere ARGs in lettuce by 80.7%-98.7% (89.5% on average).To further eliminate phyllosphere ARGs in lettuce grown with film mulching,the internal soil-endosphere-phyllosphere transfer pathway deserves more attention.We ana-lyzed the ARG hosts and the resistome in lettuce rhizosphere and phyllosphere with film mulching via hybrid Illumina-Nanopore sequencing.Pseudomonas sp.7SR1 was more abun-dant than other ARG hosts,accounting for 1.0% and 47.1% of the total bacteria in rhizosphere and phyllosphere,respectively.The species has flagella that can promote mobility and can excrete extracellular polymeric substances and/or surfactant-like microbial products,which benefits its colonization in the phyllosphere.Impeding the migration of Pseudomonas sp.7SR1 via the soil-endosphere-phyllosphere pathway would be effective to further reduce ARGs in phyllosphere.Multidrug resistant genes were predominant in phyllosphere (40.3%of the total),and 87.6% of the phyllosphere ARGs were located on chromosomes,indicat-ing relatively low horizontal gene transfer (HGT) potentials.This study provides insights into the transfer mechanism,hosts,and control strategies of phyllosphere ARGs in typical plants.
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