Human activities have altered weather patterns by causing an increase in greenhouse gas. The effects of climate change have been studied, including effects on some ecosystems throughout the world. There are many studies on changes in the soil due to climate change, but much of them did not extend their research to soil enzyme that integrates information on soil microbial status and soil physical-chemical conditions. Meanwhile, there are lots of experimental fields established to study effects of long-term fertilization on soil enzyme activities, but many did not compare the difference of soil enzyme activities and did not analyze the effect of climatic factors on soil enzyme activities with long-term fertilization under different hydrothermal conditions. In this study, we compared soil enzyme activities of three long-fertilization stations which had different hydrothermal conditions in Northeast China, and analyzed the relationship of hydrothermal condition,soil chemical properties with soil enzyme activities. Hydrothermal conditions (annual temperature and total rainfall)decreased in order of Gongzhuling (Jilin Province, China ) > Harbin (Heilongiiang Province, China) > Heihe (Heilongjiang Province, China) over the course of the long-term fertilization experiment. Sunshine hours showed the longest in Gongzhuling, the second in Heihe, and the last in Harbin. However, the order of soil enzymes was not in agreement with hydrothermal conditions. Overall, the order of soil enzymes for the same treatment among three stations was consistent in 2008 with in 2009. Correlation analysis demonstrated that different soil enzymes achieved the different affected levels by climatic factors under different fertilization treatments. Urease activity showed a significant relationship with sunshine hours in no fertilizer (CK) treatment (R=-0.91, P