The variable precision rough set (VPRS) model extends the basic rough set (RS) theory with finite uni- verses and finite evaluative measures. VPRS is concerned with the equivalence and the contained relationship between two sets. In incompatible information systems, the inclusion degree and β upper (lower) approximation of the inconsistent equivalence class to the decision equivalence classes may be affected by the variable precision. The analysis of an example of incompatible decision table shows that there is a critical point in β available-values region. In the new β range limited at the critical point, the incompatible decision table can be converted to the coordination decision table reliably. The method and its algorithm implement are introduced for the critical value search. The examples of the inconsistent equivalence class transformation are exhibited. The results illustrate that this algorithm is rational and precise. The variable precision rough set (VPRS) model extends the basic rough set (RS) theory with finite uni- verses and finite evaluative measures. VPRS is concerned with the equivalence and the contained relationship between two sets. In incompatible information systems, the inclusion degree and β upper (lower) approximation of the inconsistent equivalence class to the decision equivalence classes may be affected by the variable precision. The analysis of an example of incompatible decision table shows that there is a critical point in β available-value region. In the new β range limited at the critical point, the incompatible decision table can be converted to the coordination decision table reliably. The method and its algorithm implement are introduced for the critical value search. The examples of the inconsistent equivalence class transformation are exhibited. The results illustrate that this algorithm is rational and precise.