论文部分内容阅读
摘 要:雜交育种是产生遗传变异、表型变异及选择新变异的重要方法。然而系统发育不清晰,选择较近的亲缘关系亲本用于杂交子代往往表现出较低的遗传多样性。为探究湿地松、洪都拉斯加勒比松种间杂交后代遗传多样性水平,对8个湿地松×洪都拉斯加勒比松家系进行ISSR分析。利用10条引物共产生60个表达清晰可用于分析的标记,其中48个标记表现为多态性,占总标记数的80%;湿加松各个家系多态位点百分率在5%~23.33%之间;各个家系基因多样性指数在 0.015 2~0.087 2之间,Shannon指数的范围在 0.021 6~0.129 4之间(家系水平为 0.293 4)。8个家系间的基因分化系数Gst为
0.743 5,即总的遗传变异中有74.35%的变异存在于家系间,家系内的遗传变异占总遗传变异的25.65%。采用UPGMA法对湿加松的8个家系进行了聚类分析,确定了各个家系之间的遗传亲缘关系。8个家系间的基因流Nm为 0.172 5,表明基因流处于较低水平。
关键词:湿加松,家系,遗传多样性,ISSR标记
Abstract:Crossbreeding is an important method for generating genetic and phenotypic variation for selecting new varieties. However,because of an uncertainty of phylogenetic relationships,the parents selected for crosses may have a close genetic relationship resulting in hybrid progeny that shows low genetic diversity. Analysis of interfamily genetic diversity was undertaken among eight Pinus elliottii × P. caribaea var. hondurensis fullsib families using intersequence simple repeat (ISSR) markers. A total of 480 individuals were analyzed using 10 ISSR primers. Nei’s unbiased gene diversity in the families ranged from 0.015 2 to 0.087 2. Shannon genetic diversity index values ranged from 0.021 6 to 0.129 4. Only a small proportion (25.65%) of genetic variation resided within families,whereas the majority of genetic variation (74.35%) accounted for the interfamily genetic differentiation index of Gst=0.743 5. On the basis of estimated genetic distance and UPGMA clustering analysis,the genetic differentiation among the eight families was indicated to be relatively high with low gene flow (Nm=0.172 5). The low interfamily gene flow may be related to the high genetic heterozygosity of slash pine and Caribbean pine. These findings are expected to provide a foundation for genetic breeding of Pinus elliottii × P. caribaea var. hondurensis hybrids.
Key words:Pinus elliottii × P. caribaea var. hondurensis,families,genetic diversity,ISSR marker
CLC number:Q949
Document code:A
Article ID:10003142(2018)06081206
Pinus elliottii,commonly known as the slash pine,is native to Southeast America,from southern South Carolina west to Southeast Louisiana,and south to Florida Keys. The Caribbean pine,P. caribaea,is a hard pine,native to Central America,Cuba,Bahamas,Turks and Caicos Islands. Both species are widely used for building,pulpwood and resin production. P. elliottii × P. caribaea hybrid was firstly bred in Australia in 1955 and exhibited better growth traits than either parent while combining several complementary characteristics of the parents (Nikles,1995). In China,slash pine and Caribbean pine were introduced to Guangdong in 1933 and 1964,respectively. Since the early 1990s,more than 600 fullsib families of P. elliottii × P. caribaea were introduced from the Hongling Seed Orchard to the Guangdong Academy of Forestry. Currently,26 F1 families were selected with average annual growth of 1 m height,1.7 cm diameter at breast height (dbh),and 0.018 5 m3 volume,and growth rate 100%-240% higher than that of P. elliottii and 10%-70% higher than that of P. caribaea var. hondurensis. In addition,a comparative analysis confirmed that the growth performance of superior selected hybrid pedigrees is similar to that of F1 hybrids bred in Australia (Zhao et al,2009) and the selections exhibited many superior characteristics,such as fast growth rate,straight trunk,perfect branching pattern,and high yield of oleoresin. Often there is a reduction in genetic variation because of inbreeding and decrease in effective population size during the process of artificial selection. Therefore,there is a need to ascertain the degree of genetic variation and genetic differentiation between hybrids of superior families to aid selection during breeding and promote genetic diversity among hybrid families. Crossbreeding is the main method for enhancing genetic and phenotypic variation from which new varieties may be selected. However,because phylogenetic relationships are often uncertain,the parents in crosses may have a close genetic relationship,and consequently the hybrid progeny may show low genetic diversity. Therefore,it is essential to reveal the phylogenetic relationships between the parents and the hybrids. In the assessment of genetic diversity of pines,attention has been focused on populations (Hamelin et al,1995; Szmidt et al,1996; Lerceteau & Szmidt,1999; Mariette et al,2001; Shao et al,2007; Zhou et al,2008; Dvorak et al,2009; brahám et al,2010),seed sources (Feng et al,2001; Shui et al,2005; Yang et al,2005),seed orchards (Ai et al,2006; Zhang et al,2008),and hybrids (Tang et al,2003; Zhang et al,2011). Intersimple sequence repeat (ISSR)PCR is a technique to generate multilocus markers. ISSR markers arehighly polymorphic,and are useful in studies on genetic diversity,phylogenetic relationships,gene tagging,genome mapping,and evolutionary biology (Godwin et al,1997; Reddy et al,2002). In the present study,ISSR markers were used to reveal the genetic variation,relationship,differentiation and gene flow among different P. elliottii × P. caribaea var. hondurensis families.
1 Materials and Methods
1.1 Plant material
Seeds of P. elliottii × P. caribaea var. hondurensis from eight fullsib families-B102 × H7,B118 × Q22,B118 × R6,B2 × CM64,B2 × H3,B2H7 × S9520,B97H32 × S9315 and B106H3 × EHA01 were collected in South China. The B102 × H7,B118 × Q22,B118 × R6,B2 × CM64,and B2 × H3 families were the F1 generation and the other families were the F2 generation. The seedlings were planted in Guangdong Academy of Forestry in 2010. A total of 60 hybrid offsprings were selected randomly from each family. Fifteen hybrid offsprings were mixed as samples,and a total of 32 samples. Oneyearold needles were collected in March 2011 and stored at -20 ℃ for DNA isolation.
1.2 DNA isolation
Genomic DNA was isolated from the needles using the modified CTAB method of Li (2010). Ground fresh tissue (0.2 g) was suspended in 800 μL CTAB and incubated at 65 ℃ for 30-60 min. The suspension was centrifuged at 11 000 r·min1 for 10 min and the supernatant was extracted twice with 600 μL chloroform and precipitated with double volumes of ethanol at -20 ℃. The DNA pellet formed after centrifugation at 10 000 r·min1 for 10 min was washed twice with 75% ethanol. The DNA was then suspended in 100 μL H2O. Equal amounts of DNA from fifteen individuals of the same family were mixed.
1.3 ISSRPCR
PCR amplification was performed in a 25 μL reaction volume. The mixture contained 40 ng template DNA (2 μL DNA stock),2.5 μL of 10 mmol·L1 TrisHCl buffer,500 μmol·L1 of each dNTP (1 μL stock),1.0 U Taq DNA polymerase,and 1 μL of 10 μmol·L1 primers. To make up the volume to 25 μL,2.5 μL of sterile H2O was added to each reaction mixture. Ten ISSR primers,named UBC811,UBC817,UBC818,UBC830,UBC846,UBC850,UBC851,UBC873,UBC881 and UBC891,were selected for the analysis. Amplification was carried out in a PTC200 thermocycler with the following program:4 min of denaturation at 94 ℃,then 35 cycles of three steps,which were 50 s of denaturation at 94 ℃,50 s annealing at a temperature specific for each primer (Table 1),and 2 min of elongation at 72 ℃,with a final elongation step of 7 min at 72 ℃ and storage at -20 ℃. The PCR products were separated in a 2.0% agarose gel and fragments sizes were estimated with the DL 2000 ladder marker. A digital image was captured and analyzed using an ultraviolet analysis imaging system. 1.4 Data analysis
Amplified DNA banding patterns generated by ISSRPCR were scored as (1) for presence or (0) for absence. Using Popgene 32 software,percentage of polymorphic loci,percentage band polymorphism (PBP),Shannon’s information index (I),observed number of alleles (na),effective number of alleles (ne),gene differentiation coefficient (Gst),gene flow (Nm),Nei’s genetic distance,and Nei’s unbiased gene diversity (h),which is equivalent to expected heterozygosity (HE) of a population,were calculated. A cluster analysis using the unweighted pair group method with arithmetic mean (UPGMA) algorithm was performed based on Nei’s genetic distances with NTYSIS 2.01 software.
2 Results and Analysis
2.1 ISSR profiles
For the 32 mixed samples of P. elliottii × P. caribaea var. hondurensis from the eight fullsib families,a total of 60 replicated bands were amplified with the ten primers,of which 30 were polymorphic. The number of bands produced ranged from two to eleven per reaction,with an average six. The size of the amplified fragments ranged from 250-1 800 bp.
2.2 Genetic variation
At the family level,the percentage of polymorphic loci (PBP) was 50.00%,whereas that of a single family ranged from 3.33%-23.33%,with an average of 13.75%. At the family level,the average effective number of alleles per locus was 1.083 6. The average expected heterozygosity was estimated to be 0.049 4 within populations (h). Shannon’s index (I) ranged from 0.021 6-0.129 4,with an average of 0.074 1 at the family level. Among the eight families investigated,the B02 × CM64 family revealed higher variability (PPB,23.33%; na,1.1508; ne,0.087 2; I,0.129 4),whereas the B02 × H3 family revealed the lowest variability (PPB,3.33%; na,1.028 5; ne,0.015 2; I,0.021 6; Table 2).
2.3 Genetic relationship and cluster analysis
On the basis of analysis with Popgene 32 software,the genetic identity coefficient among the eight families ranged from 0.655 1-0.954 2. The minimum genetic distance was observed between B118 × Q22 and B118 × R6,and the maximum was observed between B102 × H7 and B97H32 × S9315. The result suggested that there was a high genetic similarity among P. elliottii × P. caribaea var. hondurensis families (Table 3).
Nei’s genetic identity and distance analysis among the eight families of P. elliottii × P. caribaea var. hondurensis showed that the highest Nei’s genetic distance (0.423 0) was between B102 × H7 and B97H32 × S9315,whereas the lowest value (0.046 9) was between B118 × Q22 and B118 × R6 (Table 3). A dendrogram representing relationships among the eight families was constructed using the UPGMA clustering method (Fig. 1). The eight families were divided into three groups with a genetic distance of 0.151. One group included B118 × Q22,B118 × R6,B102 × H7 and B106H3 × EHA01. Another group included B2 × CM64,B2 × H3 and B2H7 × S9520. B97H32 × S9315 alone made up the third group. These results indicated that families with the same female parent were genetically similar as thus a partial female parent genetic effect was apparent. 2.4 Genetic differentiation and gene flow
Analysis with Popgene 32 software of the genetic differentiation of P. elliottii × P. caribaea var. hondurensis families indicated that the majority of the genetic variation was represented between the families,accounting for 74.35% of the total familylevel variation,whereas 25.65% of the total variation occurred within families. The genetic differences among the eight families were high and relatively independent of strain. Gene flow (Nm) is a major factor impacting on the genetic structure and genetic differentiation among families. The gene flow among the P. elliottii × P. caribaea var. hondurensis families was 0.172 5,which indicated there was strong genetic differentiation among families.
3 Discussion and Conclusion
Compared with other Pinus species,the PBP (50.00%) at the family level for P. elliottii × P. caribaea is much lower than that reported for P. massoniana (80.37%:Zhu et al,2007) and P. koraiensi (61.17%) (Feng et al,2007),and is only higher than that of families of P. taiwanensis (PBP = 24.10%)(Tang et al,2 003). Similarly,the I value (0.074 1) at the family level for P.elliottii × P. caribaea var. hondurensis is lower than that of P. massoniana (0.355 8) and P. koraiensi (0.267 4),and is only higher than that of families of P. taiwanensis (0.028 6). The study by Tang et al (2003) showed that the levels of genetic diversity among ten families of P. taiwanensis were low. Similarly,in the present study a low level of genetic diversity was observed among P. elliottii × P. caribaea var. hondurensis families. However,families generated by artificial pollination are relatively independent of strain and may have certain genetic differentiation.
Analysis of molecular variation indicated high genetic variation among P. elliottii × P. caribaea var. hondurensis families rather than within families (Gst = 0.743 5). This might be caused by artificial selection rather than pollen pollution. The Nm of P. elliottii × P. caribaea var. hondurensis was 0.172 5,which indicated gene flow among families was limited. Wright (1931) proposed that gene can flow among the populations. At Nm>1 populations would be homogenized,at Nm<1 populations may be strongly differentiated,and at Nm>4 populations would become a random unit. On the basis of these criteria,strong genetic differentiation among the P. elliottii × P. caribaea var. hondurensis families is indicated. Controlled pollination of the P. elliottii × P. caribaea var. hondurensis hybrids and parental species accessions resulted in limited gene flow among families. The low interfamily gene flow may be related to the high genetic heterozygosity of slash pine and caribbean pine. The results will be helpful for selective breeding of P. elliottii × P. caribaea var. hondurensis hybrids. 參考文献:
AI C,XU L,LAI HL,et al,2006. Genetic diversity and paternity analysis of a seed orchard in Pinus massoniana [J]. Sci Silv Sin,42:146-150.
BRAHM B,MIKLSSY I,KOVCS E,et al,2010. Genetic analysis of Pinus sylvestris L. and Pinus sylvestris forma turfosa L. using RAPD markers [J]. Not Sci Biol,2(1):129-132.
DVORAK WS,POTTER KM,HIPKINS VD,et al,2009. Genetic diversity and gene exchange in Pinus oocarpa,a Mesoamerican pine with resistance to the pitch canker fungus (Fusarium circinatum) [J]. Inter J Plant Sci,170(5):609-626.
FENG FJ,CHEN MM,ZHANG DD,et al,2009. Application of SRAP in the genetic diversity of Pinus koraiensis of different provenances [J]. Afr J Biotechnol,8(6):1000-1008.
FENG FJ,ZHANG DD,HAN SJ,2007. Genetic diversity of superior clones from Pinus koraiensis seed orchard [J]. J NE For Univ,35(9):9-11. [冯富娟,张冬东,韩士杰,2007. 红松种子园优良无性系的遗传多样性 [J]. 东北林业大学学报,35(9):9-11.]
GODWIN ID,AITKEN EAB and SMITH LW,1997. Application of inter simple sequence repeat ( ISSR) markers to plant genetics [J]. Electrophoresis,18:1524-1528.
HAMELIN RC,BEAULICU J,PLOURDE A,1995. Genetic diversity in populations of cronartium ribicola in plantations and natural stands of Pinus strobes [J]. Theor Appl Genet,91(8):1214-1221.
LERCETEAU E,SZMIDT AE,1999.Properties of AFLP markers in inheritance and genetic diversity studies of Pinus sylvestris L. [J]. Heredity,82:252-260.
LI YL,ZHAO FC,ZHANG YZ,et al,2010. Rapid DNA extraction method suitable for SSR analysis in slash pine and caribbean pine [J]. Biotechnol Bull,1:83-86. [ 李义良,赵奋成,张应中,等,2010. 适用于微卫星标记的湿地松、加勒比松DNA快速提取法 [J]. 生物技术通报,1:83-86.]
MARIETTE S,CHAGND,LZIER,et al,2001. Genetic diversity within and among Pinus pinaster populations:comparison between AFLP and microsatellite markers [J]. Heredity,86:469-479.
NIKLES DG,1995. Hybirds of the SlashCaribbeanCentral American pine complex:characteristics,bases of superiority and potential utility in South China and elsewhere [M]// SHEN XH. Forest Tree Improvement in the AsiaPacific Region. China Forestry Publishing House:168-186.
REDDY MP,SARLA N,SIDDIQ EA,2002. Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding [J]. Euphytica,128:9-17.
SHAO D,PEI Y,ZHANG HQ,2007. CpSSR Analysis of variation of genetic diversity in temporal dimension of natural population of Pinus koraiensis in liangshui national nature reserve [J]. Bull Bot Res,93(4):969-980. SHUI J,HUANG SW,CHEN BQ,2005. RAPD analysis on the genetic diversity of original provenances and internal populations of Pinus taeda [J]. J S Chin Agric Univ,26(3):74-76,81. [ 税珺,黄少伟,陈炳铨,2005. 火炬松原生种源和引种群体RAPD遗传多样性 [J]. 华南农业大学学报,26(3):74-76,81.]
SZMIDT AE,WANG XR,LU MZ,1996. Empirical assessment of allozyme and RAPD variation in Pinus sylvestris (L.) using haploid tissue analysis [J]. Heredity,76:412-420.
TANG JJ,FAN YR,ZHU MY,2003.Analysis of the genetic diversity of Pinus taiwanensis populations [J]. J Zhejiang For Coll,20(1):23-26. [唐娟娟,范义荣,朱睦元,2003. 黄山松群体遗传多样性分析 [J]. 浙江林学院学报,20(1):3-26.]
WRIGHT S,1931. Evolution in Mendelian population [J] . Genetics,16:97-159.
YANG CP,WEI L,JIANG J,et al,2005. Analysis of genetic diversity for nineteen populations of Pinus sibirica du tour with technique of ISSR [J]. J NE For Univ,33(1):1-3. [楊传平,魏利,姜静,等,2005. 应用ISSRPCR对西伯利亚红松19个种源的遗传多样性分析 [J]. 东北林业大学学报,33(1):1-3.]
ZHANG HG,ZHANG L,ZHU H Y,et al,2011. ISSR idetification technology of hybrid larch progenies and their parents [J]. J NE For Univ,39(7):1-4. [张含国,张磊朱,航勇,等,2011. 落叶松杂种与亲本ISSR鉴别技术 [J]. 东北林业大学学报,39(7):1-4]
ZHANG W,GONG J,JI KS,2008. Genetic diversity for seedling orchard of masson’s pine [J]. Mol Plant Breed,6:717-723.
ZHAO FC,LI XZ,ZHANG YZ,et al,2009. Research results and prospects of crossing breeding of slash pine × caribbean pine [J]. Chin Sci Technol Achiev,10(8):21-23. [赵奋成,李宪政,张应中,等,2009. 湿地松×加勒比松杂交育种研究成果与展望 [J]. 中国科技成果,10 (8) :21-23.]
ZHOU FM,FAN JF,HOU WW,2008. Genetic diversity in Pinus tabulaeformis natural population in Shaanxi by RAPD markers [J]. J NE For Univ,36(12):1-3. [周飞梅,樊军锋,侯万伟,2008. 陕西地区油松天然群体遗传结构的RAPD分析 [J]. 东北林业大学学报,36(12):1-3.]
ZHU BF,CHEN DX,CHEN YL,et al,2007. Study on the genetic diversity of seed orchard of Pinus massoniana in Guangdong Province [J]. J Fujian For Sci Technol,34(3):1-5,22. [朱必凤,陈德学,陈虞禄,等,2007. 广东韶关马尾松种子园遗传多样性分析 [J]. 福建林业科技,34(3):1-5,22.]
0.743 5,即总的遗传变异中有74.35%的变异存在于家系间,家系内的遗传变异占总遗传变异的25.65%。采用UPGMA法对湿加松的8个家系进行了聚类分析,确定了各个家系之间的遗传亲缘关系。8个家系间的基因流Nm为 0.172 5,表明基因流处于较低水平。
关键词:湿加松,家系,遗传多样性,ISSR标记
Abstract:Crossbreeding is an important method for generating genetic and phenotypic variation for selecting new varieties. However,because of an uncertainty of phylogenetic relationships,the parents selected for crosses may have a close genetic relationship resulting in hybrid progeny that shows low genetic diversity. Analysis of interfamily genetic diversity was undertaken among eight Pinus elliottii × P. caribaea var. hondurensis fullsib families using intersequence simple repeat (ISSR) markers. A total of 480 individuals were analyzed using 10 ISSR primers. Nei’s unbiased gene diversity in the families ranged from 0.015 2 to 0.087 2. Shannon genetic diversity index values ranged from 0.021 6 to 0.129 4. Only a small proportion (25.65%) of genetic variation resided within families,whereas the majority of genetic variation (74.35%) accounted for the interfamily genetic differentiation index of Gst=0.743 5. On the basis of estimated genetic distance and UPGMA clustering analysis,the genetic differentiation among the eight families was indicated to be relatively high with low gene flow (Nm=0.172 5). The low interfamily gene flow may be related to the high genetic heterozygosity of slash pine and Caribbean pine. These findings are expected to provide a foundation for genetic breeding of Pinus elliottii × P. caribaea var. hondurensis hybrids.
Key words:Pinus elliottii × P. caribaea var. hondurensis,families,genetic diversity,ISSR marker
CLC number:Q949
Document code:A
Article ID:10003142(2018)06081206
Pinus elliottii,commonly known as the slash pine,is native to Southeast America,from southern South Carolina west to Southeast Louisiana,and south to Florida Keys. The Caribbean pine,P. caribaea,is a hard pine,native to Central America,Cuba,Bahamas,Turks and Caicos Islands. Both species are widely used for building,pulpwood and resin production. P. elliottii × P. caribaea hybrid was firstly bred in Australia in 1955 and exhibited better growth traits than either parent while combining several complementary characteristics of the parents (Nikles,1995). In China,slash pine and Caribbean pine were introduced to Guangdong in 1933 and 1964,respectively. Since the early 1990s,more than 600 fullsib families of P. elliottii × P. caribaea were introduced from the Hongling Seed Orchard to the Guangdong Academy of Forestry. Currently,26 F1 families were selected with average annual growth of 1 m height,1.7 cm diameter at breast height (dbh),and 0.018 5 m3 volume,and growth rate 100%-240% higher than that of P. elliottii and 10%-70% higher than that of P. caribaea var. hondurensis. In addition,a comparative analysis confirmed that the growth performance of superior selected hybrid pedigrees is similar to that of F1 hybrids bred in Australia (Zhao et al,2009) and the selections exhibited many superior characteristics,such as fast growth rate,straight trunk,perfect branching pattern,and high yield of oleoresin. Often there is a reduction in genetic variation because of inbreeding and decrease in effective population size during the process of artificial selection. Therefore,there is a need to ascertain the degree of genetic variation and genetic differentiation between hybrids of superior families to aid selection during breeding and promote genetic diversity among hybrid families. Crossbreeding is the main method for enhancing genetic and phenotypic variation from which new varieties may be selected. However,because phylogenetic relationships are often uncertain,the parents in crosses may have a close genetic relationship,and consequently the hybrid progeny may show low genetic diversity. Therefore,it is essential to reveal the phylogenetic relationships between the parents and the hybrids. In the assessment of genetic diversity of pines,attention has been focused on populations (Hamelin et al,1995; Szmidt et al,1996; Lerceteau & Szmidt,1999; Mariette et al,2001; Shao et al,2007; Zhou et al,2008; Dvorak et al,2009; brahám et al,2010),seed sources (Feng et al,2001; Shui et al,2005; Yang et al,2005),seed orchards (Ai et al,2006; Zhang et al,2008),and hybrids (Tang et al,2003; Zhang et al,2011). Intersimple sequence repeat (ISSR)PCR is a technique to generate multilocus markers. ISSR markers arehighly polymorphic,and are useful in studies on genetic diversity,phylogenetic relationships,gene tagging,genome mapping,and evolutionary biology (Godwin et al,1997; Reddy et al,2002). In the present study,ISSR markers were used to reveal the genetic variation,relationship,differentiation and gene flow among different P. elliottii × P. caribaea var. hondurensis families.
1 Materials and Methods
1.1 Plant material
Seeds of P. elliottii × P. caribaea var. hondurensis from eight fullsib families-B102 × H7,B118 × Q22,B118 × R6,B2 × CM64,B2 × H3,B2H7 × S9520,B97H32 × S9315 and B106H3 × EHA01 were collected in South China. The B102 × H7,B118 × Q22,B118 × R6,B2 × CM64,and B2 × H3 families were the F1 generation and the other families were the F2 generation. The seedlings were planted in Guangdong Academy of Forestry in 2010. A total of 60 hybrid offsprings were selected randomly from each family. Fifteen hybrid offsprings were mixed as samples,and a total of 32 samples. Oneyearold needles were collected in March 2011 and stored at -20 ℃ for DNA isolation.
1.2 DNA isolation
Genomic DNA was isolated from the needles using the modified CTAB method of Li (2010). Ground fresh tissue (0.2 g) was suspended in 800 μL CTAB and incubated at 65 ℃ for 30-60 min. The suspension was centrifuged at 11 000 r·min1 for 10 min and the supernatant was extracted twice with 600 μL chloroform and precipitated with double volumes of ethanol at -20 ℃. The DNA pellet formed after centrifugation at 10 000 r·min1 for 10 min was washed twice with 75% ethanol. The DNA was then suspended in 100 μL H2O. Equal amounts of DNA from fifteen individuals of the same family were mixed.
1.3 ISSRPCR
PCR amplification was performed in a 25 μL reaction volume. The mixture contained 40 ng template DNA (2 μL DNA stock),2.5 μL of 10 mmol·L1 TrisHCl buffer,500 μmol·L1 of each dNTP (1 μL stock),1.0 U Taq DNA polymerase,and 1 μL of 10 μmol·L1 primers. To make up the volume to 25 μL,2.5 μL of sterile H2O was added to each reaction mixture. Ten ISSR primers,named UBC811,UBC817,UBC818,UBC830,UBC846,UBC850,UBC851,UBC873,UBC881 and UBC891,were selected for the analysis. Amplification was carried out in a PTC200 thermocycler with the following program:4 min of denaturation at 94 ℃,then 35 cycles of three steps,which were 50 s of denaturation at 94 ℃,50 s annealing at a temperature specific for each primer (Table 1),and 2 min of elongation at 72 ℃,with a final elongation step of 7 min at 72 ℃ and storage at -20 ℃. The PCR products were separated in a 2.0% agarose gel and fragments sizes were estimated with the DL 2000 ladder marker. A digital image was captured and analyzed using an ultraviolet analysis imaging system. 1.4 Data analysis
Amplified DNA banding patterns generated by ISSRPCR were scored as (1) for presence or (0) for absence. Using Popgene 32 software,percentage of polymorphic loci,percentage band polymorphism (PBP),Shannon’s information index (I),observed number of alleles (na),effective number of alleles (ne),gene differentiation coefficient (Gst),gene flow (Nm),Nei’s genetic distance,and Nei’s unbiased gene diversity (h),which is equivalent to expected heterozygosity (HE) of a population,were calculated. A cluster analysis using the unweighted pair group method with arithmetic mean (UPGMA) algorithm was performed based on Nei’s genetic distances with NTYSIS 2.01 software.
2 Results and Analysis
2.1 ISSR profiles
For the 32 mixed samples of P. elliottii × P. caribaea var. hondurensis from the eight fullsib families,a total of 60 replicated bands were amplified with the ten primers,of which 30 were polymorphic. The number of bands produced ranged from two to eleven per reaction,with an average six. The size of the amplified fragments ranged from 250-1 800 bp.
2.2 Genetic variation
At the family level,the percentage of polymorphic loci (PBP) was 50.00%,whereas that of a single family ranged from 3.33%-23.33%,with an average of 13.75%. At the family level,the average effective number of alleles per locus was 1.083 6. The average expected heterozygosity was estimated to be 0.049 4 within populations (h). Shannon’s index (I) ranged from 0.021 6-0.129 4,with an average of 0.074 1 at the family level. Among the eight families investigated,the B02 × CM64 family revealed higher variability (PPB,23.33%; na,1.1508; ne,0.087 2; I,0.129 4),whereas the B02 × H3 family revealed the lowest variability (PPB,3.33%; na,1.028 5; ne,0.015 2; I,0.021 6; Table 2).
2.3 Genetic relationship and cluster analysis
On the basis of analysis with Popgene 32 software,the genetic identity coefficient among the eight families ranged from 0.655 1-0.954 2. The minimum genetic distance was observed between B118 × Q22 and B118 × R6,and the maximum was observed between B102 × H7 and B97H32 × S9315. The result suggested that there was a high genetic similarity among P. elliottii × P. caribaea var. hondurensis families (Table 3).
Nei’s genetic identity and distance analysis among the eight families of P. elliottii × P. caribaea var. hondurensis showed that the highest Nei’s genetic distance (0.423 0) was between B102 × H7 and B97H32 × S9315,whereas the lowest value (0.046 9) was between B118 × Q22 and B118 × R6 (Table 3). A dendrogram representing relationships among the eight families was constructed using the UPGMA clustering method (Fig. 1). The eight families were divided into three groups with a genetic distance of 0.151. One group included B118 × Q22,B118 × R6,B102 × H7 and B106H3 × EHA01. Another group included B2 × CM64,B2 × H3 and B2H7 × S9520. B97H32 × S9315 alone made up the third group. These results indicated that families with the same female parent were genetically similar as thus a partial female parent genetic effect was apparent. 2.4 Genetic differentiation and gene flow
Analysis with Popgene 32 software of the genetic differentiation of P. elliottii × P. caribaea var. hondurensis families indicated that the majority of the genetic variation was represented between the families,accounting for 74.35% of the total familylevel variation,whereas 25.65% of the total variation occurred within families. The genetic differences among the eight families were high and relatively independent of strain. Gene flow (Nm) is a major factor impacting on the genetic structure and genetic differentiation among families. The gene flow among the P. elliottii × P. caribaea var. hondurensis families was 0.172 5,which indicated there was strong genetic differentiation among families.
3 Discussion and Conclusion
Compared with other Pinus species,the PBP (50.00%) at the family level for P. elliottii × P. caribaea is much lower than that reported for P. massoniana (80.37%:Zhu et al,2007) and P. koraiensi (61.17%) (Feng et al,2007),and is only higher than that of families of P. taiwanensis (PBP = 24.10%)(Tang et al,2 003). Similarly,the I value (0.074 1) at the family level for P.elliottii × P. caribaea var. hondurensis is lower than that of P. massoniana (0.355 8) and P. koraiensi (0.267 4),and is only higher than that of families of P. taiwanensis (0.028 6). The study by Tang et al (2003) showed that the levels of genetic diversity among ten families of P. taiwanensis were low. Similarly,in the present study a low level of genetic diversity was observed among P. elliottii × P. caribaea var. hondurensis families. However,families generated by artificial pollination are relatively independent of strain and may have certain genetic differentiation.
Analysis of molecular variation indicated high genetic variation among P. elliottii × P. caribaea var. hondurensis families rather than within families (Gst = 0.743 5). This might be caused by artificial selection rather than pollen pollution. The Nm of P. elliottii × P. caribaea var. hondurensis was 0.172 5,which indicated gene flow among families was limited. Wright (1931) proposed that gene can flow among the populations. At Nm>1 populations would be homogenized,at Nm<1 populations may be strongly differentiated,and at Nm>4 populations would become a random unit. On the basis of these criteria,strong genetic differentiation among the P. elliottii × P. caribaea var. hondurensis families is indicated. Controlled pollination of the P. elliottii × P. caribaea var. hondurensis hybrids and parental species accessions resulted in limited gene flow among families. The low interfamily gene flow may be related to the high genetic heterozygosity of slash pine and caribbean pine. The results will be helpful for selective breeding of P. elliottii × P. caribaea var. hondurensis hybrids. 參考文献:
AI C,XU L,LAI HL,et al,2006. Genetic diversity and paternity analysis of a seed orchard in Pinus massoniana [J]. Sci Silv Sin,42:146-150.
BRAHM B,MIKLSSY I,KOVCS E,et al,2010. Genetic analysis of Pinus sylvestris L. and Pinus sylvestris forma turfosa L. using RAPD markers [J]. Not Sci Biol,2(1):129-132.
DVORAK WS,POTTER KM,HIPKINS VD,et al,2009. Genetic diversity and gene exchange in Pinus oocarpa,a Mesoamerican pine with resistance to the pitch canker fungus (Fusarium circinatum) [J]. Inter J Plant Sci,170(5):609-626.
FENG FJ,CHEN MM,ZHANG DD,et al,2009. Application of SRAP in the genetic diversity of Pinus koraiensis of different provenances [J]. Afr J Biotechnol,8(6):1000-1008.
FENG FJ,ZHANG DD,HAN SJ,2007. Genetic diversity of superior clones from Pinus koraiensis seed orchard [J]. J NE For Univ,35(9):9-11. [冯富娟,张冬东,韩士杰,2007. 红松种子园优良无性系的遗传多样性 [J]. 东北林业大学学报,35(9):9-11.]
GODWIN ID,AITKEN EAB and SMITH LW,1997. Application of inter simple sequence repeat ( ISSR) markers to plant genetics [J]. Electrophoresis,18:1524-1528.
HAMELIN RC,BEAULICU J,PLOURDE A,1995. Genetic diversity in populations of cronartium ribicola in plantations and natural stands of Pinus strobes [J]. Theor Appl Genet,91(8):1214-1221.
LERCETEAU E,SZMIDT AE,1999.Properties of AFLP markers in inheritance and genetic diversity studies of Pinus sylvestris L. [J]. Heredity,82:252-260.
LI YL,ZHAO FC,ZHANG YZ,et al,2010. Rapid DNA extraction method suitable for SSR analysis in slash pine and caribbean pine [J]. Biotechnol Bull,1:83-86. [ 李义良,赵奋成,张应中,等,2010. 适用于微卫星标记的湿地松、加勒比松DNA快速提取法 [J]. 生物技术通报,1:83-86.]
MARIETTE S,CHAGND,LZIER,et al,2001. Genetic diversity within and among Pinus pinaster populations:comparison between AFLP and microsatellite markers [J]. Heredity,86:469-479.
NIKLES DG,1995. Hybirds of the SlashCaribbeanCentral American pine complex:characteristics,bases of superiority and potential utility in South China and elsewhere [M]// SHEN XH. Forest Tree Improvement in the AsiaPacific Region. China Forestry Publishing House:168-186.
REDDY MP,SARLA N,SIDDIQ EA,2002. Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding [J]. Euphytica,128:9-17.
SHAO D,PEI Y,ZHANG HQ,2007. CpSSR Analysis of variation of genetic diversity in temporal dimension of natural population of Pinus koraiensis in liangshui national nature reserve [J]. Bull Bot Res,93(4):969-980. SHUI J,HUANG SW,CHEN BQ,2005. RAPD analysis on the genetic diversity of original provenances and internal populations of Pinus taeda [J]. J S Chin Agric Univ,26(3):74-76,81. [ 税珺,黄少伟,陈炳铨,2005. 火炬松原生种源和引种群体RAPD遗传多样性 [J]. 华南农业大学学报,26(3):74-76,81.]
SZMIDT AE,WANG XR,LU MZ,1996. Empirical assessment of allozyme and RAPD variation in Pinus sylvestris (L.) using haploid tissue analysis [J]. Heredity,76:412-420.
TANG JJ,FAN YR,ZHU MY,2003.Analysis of the genetic diversity of Pinus taiwanensis populations [J]. J Zhejiang For Coll,20(1):23-26. [唐娟娟,范义荣,朱睦元,2003. 黄山松群体遗传多样性分析 [J]. 浙江林学院学报,20(1):3-26.]
WRIGHT S,1931. Evolution in Mendelian population [J] . Genetics,16:97-159.
YANG CP,WEI L,JIANG J,et al,2005. Analysis of genetic diversity for nineteen populations of Pinus sibirica du tour with technique of ISSR [J]. J NE For Univ,33(1):1-3. [楊传平,魏利,姜静,等,2005. 应用ISSRPCR对西伯利亚红松19个种源的遗传多样性分析 [J]. 东北林业大学学报,33(1):1-3.]
ZHANG HG,ZHANG L,ZHU H Y,et al,2011. ISSR idetification technology of hybrid larch progenies and their parents [J]. J NE For Univ,39(7):1-4. [张含国,张磊朱,航勇,等,2011. 落叶松杂种与亲本ISSR鉴别技术 [J]. 东北林业大学学报,39(7):1-4]
ZHANG W,GONG J,JI KS,2008. Genetic diversity for seedling orchard of masson’s pine [J]. Mol Plant Breed,6:717-723.
ZHAO FC,LI XZ,ZHANG YZ,et al,2009. Research results and prospects of crossing breeding of slash pine × caribbean pine [J]. Chin Sci Technol Achiev,10(8):21-23. [赵奋成,李宪政,张应中,等,2009. 湿地松×加勒比松杂交育种研究成果与展望 [J]. 中国科技成果,10 (8) :21-23.]
ZHOU FM,FAN JF,HOU WW,2008. Genetic diversity in Pinus tabulaeformis natural population in Shaanxi by RAPD markers [J]. J NE For Univ,36(12):1-3. [周飞梅,樊军锋,侯万伟,2008. 陕西地区油松天然群体遗传结构的RAPD分析 [J]. 东北林业大学学报,36(12):1-3.]
ZHU BF,CHEN DX,CHEN YL,et al,2007. Study on the genetic diversity of seed orchard of Pinus massoniana in Guangdong Province [J]. J Fujian For Sci Technol,34(3):1-5,22. [朱必凤,陈德学,陈虞禄,等,2007. 广东韶关马尾松种子园遗传多样性分析 [J]. 福建林业科技,34(3):1-5,22.]