Complete genome sequence analysis of two Citrus tatter leaf virus (CTLV) isolates from China

来源 :Journal of Integrative Agriculture | 被引量 : 0次 | 上传用户:ming_yue_zhang
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In order to understand molecular characterization of Citrus tatter leaf virus(CTLV) isolated from China,full-length cDNAs of CTLV-MTH and CTLV-XHC from Citrus reticulata and Citrus sinensis were cloned and sequenced based on whole-genome amplification by RT-PCR.The complete nucleotide sequences of CTLV-MTH and CTLV-XHC were determined to be 6497 nucleotides in length and shared 79.9-91.0%and 78.8-98.0%nucleotide sequence identity,respectively,with other Apple stem grooving virus(ASGV) or CTLV strains available in GenBank.Unexpectedly,CTLV-MTH showed the highest nucleotide sequence identity(91%) with an apple isolate of ASGV,followed by 86.5%with ASGV-HH and 85.7%with ASGV-CHN.Furthermore,CTLV-MTH and three ASGV strains were grouped to a separate cluster in the phylogenetic tree,suggesting it has a closer relationship to ASGV than to CTLV.Therefore,it can be concluded roughly that CTLV may be not a distinct strains of ASGV.We proposed that Citrus tatter leaf virus should be renamed Apple stem grooving virus. In order to understand molecular characterization of Citrus tatter leaf virus (CTLV) isolated from China, full-length cDNAs of CTLV-MTH and CTLV-XHC from Citrus reticulata and Citrus sinensis were cloned and sequenced based on whole-genome amplification by RT-PCR The complete nucleotide sequences of CTLV-MTH and CTLV-XHC were determined to be 6497 nucleotides in length and shared 79.9-91.0% and 78.8-98.0% nucleotide sequence identities, respectively, with other Apple stem grooving virus (ASGV) or CTLV strains available in GenBank. Unnexpectedly, CTLV-MTH showed the highest nucleotide sequence identity (91%) with an apple isolate of ASGV, followed by 86.5% with ASGV-HH and 85.7% with ASGV-CHN.Furthermore, CTLV-MTH and three ASGV suggesting that grouped to a separate cluster in the phylogenetic tree, suggesting it has a closer relationship to ASGV than to CTLV.Therefore, it can be concluded roughly that that CTLV may be not a distinct from ASGV. We proposed that Citrus tatter leaf virus should be renamed Appl e stem grooving virus.
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