,Predicting microRNA-disease association based on microRNA structural and functional similarity netw

来源 :定量生物学(英文版) | 被引量 : 0次 | 上传用户:qin6668
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
Background:Increasing evidences indicate that microRNAs (miRNAs) are functionally related to the development and progression of various human diseases.Inferring disease-related miRNAs can be helpful in promoting disease biomarker detection for the treatment,diagnosis,and prevention of complex diseases.Methods:To improve the prediction accuracy of miRNA-disease association and capture more potential diseaserelated miRNAs,we constructed a precise miRNA global similarity network (MSFSN) via calculating the miRNA similarity based on secondary structures,families,and functions.Results:We tested the network on the classical algorithms:WBSMDA and RWRMDA through the method of leaveone-out cross-validation.Eventually,AUCs of 0.8212 and 0.9657 are obtained,respectively.Also,the proposed MSFSN is applied to three cancers for breast neoplasms,hepatocellular carcinoma,and prostate neoplasms.Consequently,82%,76%,and 82% of the top 50 potential miRNAs for these diseases are respectively validated by the miRNA-disease associations database miR2Disease and oncomiRDB.Conclusion:Therefore,MSFSN provides a novel miRNA similarity network combining precise function network with global structure network of miRNAs to predict the associations between miRNAs and diseases in various models.
其他文献
Background:Ab initio protein structure prediction is to predict the tertiary structure of a protein from its amino acid sequence alone.As an important topic in
我们采用抽样调查的方法 ,从《现代汉语词典》 5 4 5— 5 6 7页选取 2 2个动词 (为了使分析全面一些 ,另外选取了“存在、发生、消失、应该、是、去、起来”等 7个动词 ) ,以
Background:In this work,we study two seemingly unrelated aspects of core genetic nonlinear dynamical control of the competence phenotype in Bacillus subtilis,a
热烈庆祝“香港中华国际人体科学择业研究院”和“天山圣林国际择业文化传播有限公司”正式成立!2013年7月1日,伴随着“圣林择业”和《天人一体择业法》风雨兼程21载后,根据
Background:Quantitative systems pharmacology (QSP) is an emerging discipline that integrates diverse data to quantitatively explore the interactions between dru
不久前当选为第七届全国人大代表、安徽省人大常委副主任的杨纪珂教授,即将赴京出席全国人大之际,在他的寓所对记者说,他希望我国能尽快确立新闻记者的旁听权和发表权。作为
Background: Single-cell RNA-sequencing (scRNA-seq) is a rapidly evolving technology that enables measurement of gene expression levels at an unprecedented resol
Background:Molecular competition brings about trade-offs of shared limited resources among the cellular components,and thus introduces a hidden layer of regulat
新闻的真实性原则,是新闻工作者、业余通讯员必须遵循的根本原则。有的人和事,在表象上是真实的,而就本质看又不真实。在具体的采访活动中,应该如何认识、把握这个原则呢?青