Affected by common target selection, target motion estimation and time alignment, the radar system error registration algorithm is greatly limited in application. By using communication and time synchronization function of a data link network, a collaborative algorithm is proposed, which makes use of a virtual coordinates constructed by airplane to get high precision measurement source and realize effective estimation of the system error. This algorithm is based on Kalman filter and does not require high capacities in memory and calculation. Simulated results show that the algorithm has better convergence performance and estimation precision, no constrain on sampling period and accords with transfer characteristic of data link and tactical internet perfectly.