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The deaggregating ability of β-CD and α-CD against the aggregated n-hexadecyl β-naphthoate (A16) and n-dodecyl β-naphthoate (A12) depended not only on the aggregating tendency of A16 and A12 but also on the initial concentration of the aggregated A16 or A12. The inclusive ability of β-CD with the substrates is greater than that of α-CD under hydrophobic lipophilie interaction.