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Taking one-dimensional shallow water wave equation as an example, a comparative analysis on the computational stability related to the short-range motion of atmosphere and ocean is carried out for the conservative and nonconservative scheme, and it is pointed out that the computational stability of conservative scheme is absolutely different from that of the nonconservative scheme. The relationship between the short-range motion of atmosphere and ocean and the conservative and nonconservative scheme is further discussed. The constructed conservative scheme is proved to be stable by the numerical experiment for the short-range motion of atmosphere and ocean while the CTCS scheme is unstable. So that the conservative scheme for the solution of this kind of problem has more advantages.