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目的:进一步精细限定鼻咽癌9p21-22区域等位基因杂合性丢失的频率和范围,筛选和克隆其共同缺失区内鼻咽癌相关的候选抑瘤基因。方法:应用11个定位于 9p21-22区域的高密度微卫星位点,检测 25例低分化鼻咽癌患者的杂合性丢失,确定其共同缺失区;用RT-PCR和Northern筛出在鼻咽癌细胞株HNE1和鼻咽癌活检组织中表达下调的、定位于共同缺失区内的 3’末端ESTs(Express Sequence Tags);采用 RACE技术和生物信息学资源克隆出候选EST的全长cDNA。结果: 25例患者中有17例(68%)存在一个或多个位点的杂合性丢失,其中D9s161(35.0%,7/20),D9S1678(31.5%,6/19),D9S263(3.3%,6/18)和D9S1853(33.3%,7/21)四个紧邻位点的丢失频率相对较高,并发现六位患者在该四个位点表现为连续性缺失;筛选D9S161-D9S1853区域内25个代表新基因的3’末端ESTs序列,发现一个EST(dbEST:208825)在鼻咽癌细胞株HNE1及73%(11/15)的活检组织中表达降低, Multiple Tissue Nort hem(MTN
OBJECTIVE: To further narrow the frequency and range of loss of allelic heterozygosity in 9p21-22 region of nasopharyngeal carcinoma, and to screen and clone candidate tumor suppressor genes associated with nasopharyngeal carcinoma in its common deletion region. Methods: 11 high-density microsatellite loci located in 9p21-22 region were used to detect the loss of heterozygosity in 25 cases of poorly-differentiated NPC. The common deletion region was determined. Phage cancer cell line HNE1 and nasopharyngeal carcinoma biopsy tissue located in the common deletion region 3 ’end ESTs (Express Sequence Tags); RACE technology and bioinformatics resources cloned candidate EST full-length cDNA. RESULTS: Seventeen (68%) of the 25 patients had loss of heterozygosity at one or more loci, of which D9s161 (35.0%, 7/20), D9S1678 (31.5%, 6/19) , The loss frequency of four adjacent sites of D9S263 (3.3%, 6/18) and D9S1853 (33.3%, 7/21) was relatively high, and found that six patients showed continuous at the four sites The deletion of 3 ESTs of 25 new genes in D9S161-D9S1853 region was found. One EST (dbEST: 208825) was found to be down-regulated in nasopharyngeal carcinoma cell line HNE1 and 73% (11/15) of biopsies Multiple Tissue Nort hem (MTN