QTL Mapping and Epistasis Analysis for Yield Traits in an RIL Population of Rice(Oryza sativa L.)

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A genetic linkage map consisting of 168 DNA markers was constructed based on a recombinant inbred line(RID population derived from a cross between a high yielding indica variety, Zhong156, and a low yielding indica variety, Gumeil. The markers on the linkage map were distributed on all 12 chromosomes and covered 1 447. 9 cM of the genome. The parents and 304 RILs were grown in China National Rice Research Institute(CNRRI), Hangzhou, China, in 2001, over two seasons in a randomized block design. The statistic software of QTL Mapper 1.01 was applied to detect quantitative trait loci(QTLs)and additive by environment(AE)interactions for yield traits, including panicle length, number of panicles per plant, number of spikelets per panicle, number of filled grains per panicle, fertility and kilo-grain weight. A total of 30 QTLs with significant additive effects located on all chromosomes, except chromosomes 5 and 9, and two QTLs with significant AE interactions, were detected. Thirty-one interactions of QTLs s A genetic linkage map consisting of 168 DNA markers was constructed based on a recombinant inbred line (RID population derived from a cross between a high yielding indica variety, Zhong 156, and a low yielding indica variety, Gumeil. The markers on the linkage map were distributed on all 12 chromosomes and covered 1 447. 9 cM of the genome. The parents and 304 RILs were grown in China National Rice Research Institute (CNRRI), Hangzhou, China, in 2001, over two seasons in a randomized block design. The statistic software of QTL Mapper 1.01 was applied to detect quantitative trait loci (QTLs) and additive by environment (AE) interactions for yield traits, including panicle length, number of panicles per plant, number of spikelets per panicle, number of filled grains per panicle, fertility and kilo-grain weight. A total of 30 QTLs with significant additive effects located on all chromosomes, except chromosomes 5 and 9, and two QTLs with significant AE interactions, were detected. Thirty-one inte ractions of QTLs s
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