A robust controller is designed by using the bilinear transformation and H∞ mixed sensitivity method for bio-dissimilation process of glycerol to 1,3-propanediol. Under the controller the system works near an optimal steady-state for the volumetric productivity of 1,3-propanediol attaining its maximization. The design procedure is carried out by tuning the transformation parameter and DC gain of the performance weighted function, which is an iterative and optimal search process.Simulation results are presented which show that the designed robust controller not only ensures the robust stability of the system in face of the parametric variations in the model, but also makes the system have a favourable robust tracking performance. The validity of the proposed H∞ controller has been tested.